Yes, if you're able to scan the ECM and read the TCM you'll need to write your own DSP5 tune and use that. Need to source a stock file for your truck...
I've had a quick look at your log and you appear to have some issue with your voltage. Your log starts out at 14V and by the end of the log it's down...
Heres one that i manually did in hex. I imported this into efi from a .bin. I have personally tested it. I would just use your file and segment swap...