Where is your intake air temperature sensor located? It is sky high in the second log and causing issues... Does this thing have an intercooler?
Also, do you have a fuel pressure gage? Want to make sure it isn't fluctuating - with the fuel I added in the first tune, it should have richened up more than it did...
Is your transmission slipping? In the second log, it looks like you hit it pretty hard a couple times and it doesn't pick up much speed...
Here is another tune richened up further...

