Hi Jose,
Welcome to the forum
What injectors do you have (lb/hr @ psi)...?
Is you FPR manifold referenced...?
What does rail pressure measure (with reference hose removed during measurement)...?
For your huge injectors B4003, B4004, B9021 should be much smaller, try say 0.3 ms.
Your B0101 VE table seems too high (that table is for MAP below 105 kPa, i.e. non-boost).
Your B0101 and A0009 column 105 kPa have differing values.
Warning: your B3618 is set leaner than stoich (EQR 0.9951)... for boosted applications I would set this to EQR 1.25... check what fueling units your tunetool is set to.
If you set B3613 to 105 kPa (rather than 150 kPa), then you have no gap between B3647 and B3618.